Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs76649557 chr8:6186765 C/T 2.25E-5 499 21.85 24.03 7.72 KM Plot
LGG rs76971107 chr3:153669417 T/C 0 509 22.58 22.3 0.23 KM Plot
LGG rs77266468 chr8:6183831 T/G 2.31E-5 497 22.12 24.03 7.72 KM Plot
LGG rs77340995 chr6:53111758 A/G 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs77429675 chr6:53147972 G/A 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs77545716 chr8:6184524 C/T 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs7768167 chr6:53110684 T/C 1.69E-5 508 22.47 22.87 14.8 KM Plot
LGG rs7768758 chr6:88251077 T/C 8.88E-6 509 22.37 24.62 4.08 KM Plot
LGG rs77821604 chr5:169007193 G/A 1.65E-8 506 22.37 23.85 6.83 KM Plot
LGG rs77951724 chr16:8635381 G/C 7.92E-8 494 24.03 20.27 11.7 KM Plot
LGG rs78116153 chr5:169016942 C/T 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs78271907 chr6:53144016 T/C 2.55E-5 508 22.57 22.23 14.8 KM Plot
LGG rs78299733 chr14:24422915 T/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7832912 chr8:321488 C/T 6.65E-5 506 22.83 21.77 21.3 KM Plot
LGG rs78376604 chr1:202762491 C/A 3.48E-5 497 22.57 21.8 5.12 KM Plot